Research Platforms' Performance Reports TMB 2015-2017

2015 1 Phuong N. Tran, Nicholas E. H. Tan, Yin Peng Lee, Han Ming Gan, Steven J. Polter, Lucas K. Dailey, André O. Hudson, Michael A. Savka. 2015. Whole-Genome Sequence and Classification of 11 Endophytic Bacteria from Poison Ivy (Toxicodendron radicans). Genome Announcements. https://dx.doi.org/10.1128/genomeA.01319-15 2 Yaakop AS, Chan KG, Gan HM, Goh KM.. 2015. Draft Genome Sequence of Yellow Pigmented Jeotgalibacillus alimentarius JY-13T, the First Halophile Strain of the Genus Jeotgalibacillus. Genome Announcements. https://dx.doi.org/10.1128/genomeA.01224-15 3 Austin CM, Tan MH, Croft LJ, Hammer MP, Gan HM. 2015. Whole genome sequencing of the Asian arowana (Scleropages formosus) provides insights into the evolution of ray-finned fishes. Genome Biology and Evolution. https://dx.doi.org/10.1093/gbe/evv186 4 Tan MH, Gan HM, Gan HY, Lee YP, Croft LJ, Schultz MB, Miller AD, Austin CM. 2015. First comprehensive multi-tissue transcriptome of Cherax quadricarinatus (Decapoda: Parastacidae) reveals unexpected diversity of endogenous cellulase. Organisms Diversity & Evolution. https://dx.doi.org/10.1007/s13127-015-0237-3 5 Brandon-Mong GJ, Gan HM, Sing KW, Lee PS, Lim PE, Wilson JJ. 2015. DNA metabarcoding of insects and allies: An evaluation of primers and pipelines. Bulletin of Entomological Research. https://dx.doi.org/10.1017/S0007485315000681 6 Chua, P., Har, Z. M., Austin, C.M., Yule, C.M., Dykes, G.A., and Lee, S.M. 2015. Genome Sequencing and annotation of Aeromonas sp. HZM. Genomics Data. https://dx.doi.org/10.1016/j.gdata.2015.05.008 7 Chua, P., Har, Z. M., Austin, C.M., Yule, C.M., Dykes, G.A., and Lee, S.M. 2015. Genome Sequencing and annotation of Cellulomonas sp. HZM. Genomics Data. https://dx.doi.org/10.1016/j.gdata.2015.05.009 8 Kian Mau Goh, Kok-Gan Chan, Amira Suriaty Yaakop, Chia Sing Chan, Robson Ee, Wen-Si Tan, Han Ming Gan. 2015. Draft Genome Sequence of Jeotgalibacillus soli DSM 23228, a Bacterium Isolated from Alkaline Sandy Soil.. Genome Announcements. https://dx.doi. org/10.1128/genomeA.00512-15 9 Wilhelm Wei Han Eng, Han Ming Gan, Huan You Gan, André O. Hudson, Michael A. Savka. 2015. Whole-Genome Sequence and Annotation of Octopine-Utilizing Pseudomonas kilonensis (Previously P. fluorescens) Strain 1855-344. Genome Announcements. https://dx.doi.org/10.1128/genomeA.00463-15 10 Gan HY, Gan HM, Savka MA, Triassi AJ, Wheatley MS, Naqvi KF, Foxhall TE, Anauo MJ, Baldwin ML, Burkhardt RN, O’Bryon IG, Dailey LK, Busairi NI, Keith RC, Khair MHMM, Rasul MZM, Rosdi NAM, Mountzouros JR, Rhoads AC, Selochan MA, Tautanov TB, Polter SJ, Marks KD, Caraballo AA, Hudson AO. 2015. Whole-genome sequencing and annotation of Bacillus safensis RIT372 and Pseudomonas oryzihabitans RIT370 from Capsicum annuum (bird’s eye chili) and Capsicum chinense (yellow lantern chili), respectively. Genome Announcements. https://dx.doi.org/10.1128/genomeA.00288-15 11 M. E. Torres, T. Cox, W.-L. Hong, J. McManus, J. C. Sample, C. Destrigneville, H. M. Gan, H. Y. Gan, J. W. Moreau. 2015. Crustal fluid and ash alteration impacts on the biosphere of Shikoku Basin sediments, Nankai Trough, Japan. Geobiology. https://dx.doi. org/10.1111/gbi.12146 12 Amira Suriaty Yaakop, Kok-Gan Chan, Han Ming Gan, Kian Mau Goh. 2015. Draft genome of Jeotgalibacillus campisalis SF-57T, a moderate halophilic bacterium isolated from marine saltern. Marine Genomics. https://dx.doi.org/10.1016/j.margen.2015.05.004 13 Steven J. Polter, Alexander A. Caraballo, Yin P. Lee, Wilhelm W. H. Eng, Han M. Gan, Matthew S. Wheatley, Michael A. Savka, Bolaji N. Thomas, André O. Hudson. 2015. Isolation, Identification, Whole-Genome Sequencing, and Annotation of Four Bacillus Species, B. anthracis RIT375, B. circulans RIT379, B. altitudinis RIT380, and B. megaterium RIT381, from Internal Stem Tissue of the Insulin Plant Costus igneus. Genome Announcements. https://dx.doi.org/10.1128/genomeA.00847-15 14 Mun Hua Tan, Han Ming Gan, Mark B. Schultz, Christopher M. Austin. 2015. MitoPhAST, a new automated mitogenomic phylogeny tool in the post-genomic era with a case study of 89 decapod mitogenomes including eight new freshwater crayfish mitogenomes. Molecular Phylogenetics and Evolution. https://dx.doi.org/10.1016/j.ympev.2015.02.009 15 Han Ming Gan, Huan You Gan, Nurul H. Ahmad, Nazrin A. Aziz, André O. Hudson, Michael A. Savka. 2015. Whole genome sequencing and analysis reveal insights into the genetic structure, diversity and evolutionary relatedness of luxI and luxR homologs in bacteria belonging to the Sphingomonadaceae family. Frontiers in Cellular and Infection Microbiology. https://dx.doi.org/10.3389/ fcimb.2014.00188 40

Research Platforms' Performance Reports TMB 2015-2017 | Page 41