Research Platforms' Performance Reports TMB 2015-2017

PUBLICATIONS 40 Han Ming Gan, Mun Hua Tan & Christopher M. Austin. 2016. The complete mitogenome of the Macquarie perch, Macquaria australasica Cuvier, 1830 (Teleostei: Percichthyidae). Mitochondrial DNA. https://dx.doi.org/10.3109/19401736.2014.895996 41 Christopher M. Austin, Mun Hua Tan, Laurence J. Croft & Han Ming Gan. 2016. The complete mitogenome of the crayfish Cherax glaber (Crustacea: Decapoda: Parastacidae). Mitochondrial DNA. https://dx.doi.org/10.3109/19401736.2014.880897 42 Christopher M. Austin, Mun Hua Tan, Laurence J. Croft & Han Ming Gan. 2016. The complete mitogenome of the freshwater crayfish Cherax cainii (Crustacea: Decapoda: Parastacidae). Mitochondrial DNA. https://dx.doi.org/10.3109/19401736.2013.878907 43 Mookiah Saminathan, Chin Chin Sieo, Han Ming Gan, Norhani Abdullah, Clemente Michael Vui Ling Wong, Yin Wan Ho. 2016. Effects of condensed tannin fractions of different molecular weights on population and diversity of bovine rumen methanogenic archaea in vitro, as determined by high-throughput sequencing. Animal Feed Science and Technology. https://dx.doi.org/10.1016/j. anifeedsci.2016.04.005 44 Mookiah Saminathan, Chin Chin Sieo, Han Ming Gan, Sharanya Ravi, Karthikkumar Venkatachalam, Norhani Abdullah, Clemente Michael Vui Ling Wong and Yin Wan Ho. 2016. Modulatory effects of condensed tannin fractions of different molecular weights from a Leucaena leucocephala hybrid on the bovine rumen bacterial community in vitro. Journal of the Science of Food and Agriculture. https://dx.doi.org/10.1002/jsfa.7674 45 Theresa Wan-Chen Yap, Han-Ming Gan, Yin-Peng Lee, Alex Hwong-Ruey Leow, Ahmad Najib Azmi, Fritz Francois, Guillermo I. Perez- Perez, Mun-Fai Loke, Khean-Lee Goh, Jamuna Vadivelu. 2016. Helicobacter pylori Eradication Causes Perturbation of the Human Gut Microbiome in Young Adults. PLoS ONE. https://dx.doi.org/10.1371/journal.pone.0151893 46 Naqvi KF, Patin D, Wheatley M, Savka MA, Dobson R, Gan H, Barreteau H, Blanot D, Mengin-Lecreulx D and Hudson AO. 2016. Identification and partial characterization of a novel UDP-N-acetylenolpyruvoylglucosamine reductase/UDP-N-acetylmuramate:L- alanine ligase fusion enzyme from Verrucomicrobium spinosum DSM 4136T. Frontiers in Microbiology. https://dx.doi.org/10.3389/ fmicb.2016.00362 47 Yap K-P, Ho WS, Gan HM, Chai LC and Thong KL. 2016. Global MLST of Salmonella Typhi Revisited in Post-genomic Era: Genetic Conservation, Population Structure, and Comparative Genomics of Rare Sequence Types. Frontiers in Microbiology. https://dx.doi. org/10.3389/fmicb.2016.00270 48 Kavousi N, Eng WWH, Lee YP, Tan LH, Thuraisingham R, Yule CM, Gan HM. . 2016. First High-Quality Draft Genome Sequence of Pasteurella multocida Sequence Type 128 Isolated from Infected Bone. Genome Announcements. https://dx.doi.org/10.1128/ genomeA.00023-16 49 Yoong-Kit Aw, Kuan-Shion Ong, Learn-Han Lee, Yuen-Lin Cheow, Catherine M. Yule and Sui-Mae Lee. 2016. Newly Isolated Paenibacillus tyrfis sp. nov., from Malaysian Tropical Peat Swamp Soil with Broad Spectrum Antimicrobial Activity. Frontiers in Microbiology. https://dx.doi.org/10.3389/fmicb.2016.00219 50 Thai BT, Tan MH, Lee YP, Gan HM, Tran TT, Austin CM. 2016. Characterisation of 12 microsatellite loci in the Vietnamese commercial clam Lutraria rhynchaena Jonas 1844 (Heterodonta: Bivalvia: Mactridae) through next-generation sequencing.. Molecular Biology Reports. https://dx.doi.org/10.1007/s11033-016-3966-2 51 K Harrisson, A Pavlova, H M Gan, Y P Lee, C M Austin and P Sunnucks. 2016. Pleistocene divergence across a mountain range and the influence of selection on mitogenome evolution in threatened Australian freshwater cod species. Heredity. https://dx.doi.org/10.1038/ hdy.2016.8 52 Lai WX, Gan HM, Hudson AO, Savka MA. 2016. Whole-Genome Sequencing Reveals a New Genospecies of Methylobacterium sp. GXS13, Isolated from Vitis vinifera L. Xylem Sap. Genome Announcements. https://dx.doi.org/10.1128/genomeA.01695-15 53 Sam E. Walton, Amirrudin B. Ahmad, Han M. Gan, Jonathan D. Bolland. 2016. A newly identified population of Gambusia affinis (Baird and Girard, 1853), a non-native invasive species, in Lake Kenyir, Malaysia: implications for management. BioInvasions Records. https:// dx.doi.org/ 54 Tiwari GJ, Liu Q, Shreshtha P, Li Z, Rahman S (2016). RNAi-mediated down-regulation of the expression of OsFAD2-1: effect on lipid accumulation and expression of lipid biosynthetic genes in the rice grain. BMC Plant Biology 16, 189- 55 Tiwari GJ, Chiang MY, De Silva JR, Song BK, Lau YL,Rahman S (2016) Lipase genes expressed in rice bran: LOC Os11g43510 encodes a novel rice lipase, Journal of Cereal Science 71, 43-52. 56 Jahan NK, Ahmad MP, Dhanoa A, Meng CY, Ming LW, Reidpath DD, Allotey P, Zaini A, Phipps ME, Fatt QK, Rabu AB, Sirajudeen R, Fatan AA, Ghafar FA, Ahmad HB, Othman I, SyedHassan S. A community-based prospective cohort study of dengue viral infection in Malaysia: the study protocol. Infectious Diseases of Poverty. 2016 Aug 11;5(1):76. doi: 10.1186/s40249-016-0172-3. 39

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