Speciality Chemicals Magazine MAR / APR 2024 | Page 52

Dr Guotao Li , director of peptide R & D at GenScript Biotech , offers an overview of an emerging class of peptides
..... - Neoantigen prediction & prioritisation

Neoantigen peptides for novel immunotherapy in pancreatic cancer

Dr Guotao Li , director of peptide R & D at GenScript Biotech , offers an overview of an emerging class of peptides

Pancreatic cancer is one of the most lethal malignancies , characterised by a dismal prognosis and limited treatment options . Conventional therapies , such as surgery , chemotherapy and radiation , have shown limited efficacy in improving patient outcomes .

The emergence of immunotherapy as a promising approach for cancer treatment has led to the exploration of novel strategies , including the use of neoantigen peptides . These are tumour-specific antigens that arise from somatic mutations in cancer cells , making them attractive targets for immunotherapy .
Role of neoantigens
Neoantigen peptides are derived from tumour-specific mutations and have the potential to elicit a robust immune response . The immune system recognises them as foreign entities , leading to the activation of cytotoxic T cells and the generation of an antitumour immune response .
The specificity of neoantigens for cancer cells makes them an attractive target for immunotherapy , as they have the potential to selectively target and destroy tumour cells while sparing normal tissues . Moreover , they can overcome the immunosuppressive microenvironment of pancreatic cancer , providing a promising avenue for overcoming the immune evasion mechanisms employed by the tumour .
Despite this promising potential , several challenges exist in harnessing them for immunotherapy in pancreatic cancer . One of the major hurdles is the identification and validation of neoantigens that are truly
, l'umour Tissue
Obtain tumour biopsy
RNA

I I 11

.-- � 1111:�--- --
Activate . ��8�
DNA & RNA sequencing
MHCI
..... - Neoantigen prediction & prioritisation
Figure 1 - Framework for the identification & prioritisation of neoantigens
immunogenic and can elicit a potent anti-tumour immune response .
The complexity of the tumour mutational landscape and the heterogeneity of neoantigens across different patients present significant challenges in personalised neoantigen-based immunotherapy . Additionally , the development of effective delivery systems and adjuvants to enhance the immunogenicity of neoantigen peptides is crucial for their successful application in clinical settings .
Unexpected preclinical discoveries
The untranslated regions ( UTRs ) in the mRNA play a crucial role in its translation , degradation and localisation , despite not coding for the final protein . The 5 ' UTR contains upstream open reading frames
_, r---- , I I
- _ _, I I I
--, "- ----
Note : Adapted from reference 1 . Retrieved from https :// www . frontiersin . org / articles / 10.3389 / fcell . 2020.00728 / full
( uORFs ) that can interfere with translation initiation , affecting the main open reading frame of the gene .
However , recent research has found that some uORFs can be translated into peptides with unexpected functions . A team from Sun Yat-Sen University discovered that the uORF of the RNF10 gene could serve as an antigenic epitope , supporting the development of a novel immunotherapy ( Figure 2 ). 2
The RNF family of E3 ubiquitin ligases is essential in maintaining cellular functions , with dysregulation observed in various diseases , including pancreatic cancer . The researchers screened the expression levels of RNF family members in the CT26 cancer cell line and found that RNF10 was most abundant . The uORF region of RNF10 was found to produce a neoantigen peptide ( uPeptide ) that
52 SPECIALITY CHEMICALS MAGAZINE ESTABLISHED 1981