Lab Matters Summer 2020 | Page 15

FROM THE BENCH Expanding partnerships and efficiencies MHDL’s year one validation and utilization of the two transport systems expanded MHDL capacity to serve high risk populations beyond the proximal STD clinic. During Project Years 2 and 3, the MHDL collaborated with SURRG Program partners to enroll community based non-STD clinics throughout the city of Milwaukee to participate in surveillance for resistant GC infections. Participating clinicians and laboratorians received training in GC culture collection and transport, laboratory identification procedures, AST and interpretation of test result reports. Building these partnerships also helped accomplish the SURRG goal of providing resources to other jurisdictions as a next step. In Project Year 2, MHDL progressed from manual to fully automated data management through the use of SQL and Python scripting. This contributed to timely quality assurance and evaluation through monthly and yearly performance metrics, including patient demographics, TAT and timely reporting of RS isolates to local DIS, clinical partners and epidemiologists, state and CDC (Table 1). Using data to drive improvement practices In 2019 MHDL began providing all clients with a customized requisition to save time, lower transcriptional error rate and gather required demographics. Customized requisition forms also capture culture criteria and other required SURRG project clinical and epidemiological data elements. Procuring precise demographics, specimen source, collection and follow-up TOC status is essential to ensuring accurate patient information in the laboratory information system, as well as clinical management of the disease and fulfillment of grant deliverables. To improve recovery of GC isolates and decrease the volume of negative specimens, collection criteria were modified to include only clients reporting symptoms or, if asymptomatic, reporting contact to a confirmed case of GC, and GC NAAT-positive patients returning for treatment and/or TOC visits. TABLE 1: Milestones Achieved in GC-AST Workflow Milestone achieved Implementation of Etest for AST Use of eSwab ™ collection and transport system at non-STD clinics Use of InTray™ GC instead of MTM plates with limited self-life in candle jar at STD clinics Detection of first isolate with RS to azithromycin using Etest ® Use of LEAN principles to improve GC workflow, achieving optimum turnaround time of <5 days Milestone achieved Addition of two non-STD clinics Automated generation of CDC monthly metrics with required clinical and laboratory data elements PROJECT YEAR 1 Project Impact Moved from Disc diffusion Kirby Bauer (Qualitative) to Etest (Quantitative) No requirement for prior incubation before transport within 24 hrs. Direct specimen collection and inoculation onto selective media w/ 5% CO 2 environment Replacement for time consuming and laborious gold standard method, agar-dilution Helped initiate rapid field investigations of RS isolates to stop spread of resistant GC PROJECT YEAR 2 Project Impact Increased surveillance to monitor resistance in a diverse population Increased bench time for GC laboratorians, lower error rate, more opportunity for data analysis Detection of first isolate with RS to ceftriaxone Part of first-line treatment regimen PROJECT YEAR 3 Milestone achieved Project Impact Partnership with MSM clinic and third Brought high-risk population under surveillance non-STD clinic Revised culture collection criteria for non-STD and MSM partner clinics Customized lab requisition form to capture data elements Weekly comparison of NAAT vs Culture at same site of infection Better utilization of resources and testing capabilities Improved efficiency for clinics and laboratory Determine culture viability or overgrowth issues of non-GC isolates particularly at non-genital sites PROJECT YEAR 4 Milestone achieved Project Impact Detection of first isolate with RS to cefixime Treatment alternative to ceftriaxone Instituted option for patient-collected vaginal and penile meatal swabs for culture Additionally, genital and extragenital culture specimens were only collected at anatomic sites of reported sexual activity. Efficiency of culture collection criteria at both STD and non-STD clinics was evaluated quarterly (# Patients cultured/# NAAT+ by anatomic site at STD and non-STD). Adoption of the new collection criteria significantly decreased the volume of specimens yielding negative results while increasing the yield of isolates. (Figure 1). Option for clients with privacy concerns or otherwise unwilling to undergo pelvic exam, screen high-risk clients including MSM unwilling to undergo invasive collection Monthly meetings with partners and clinics addressed collection criteria, and allowed for ongoing discussion of workload and findings, supply needs, epidemiological needs and process improvement at clinics and the laboratory. Local SURRG successes include assisting with testing for disseminated gonococcal infection (DGI) cases. MHDL performed culture and AST on specimens from disseminated sites of infection (e.g., skin, synovial fluid, blood or cerebrospinal fluid). 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